BioFSharp.BioContainers
2.0.0-preview.3
dotnet add package BioFSharp.BioContainers --version 2.0.0-preview.3
NuGet\Install-Package BioFSharp.BioContainers -Version 2.0.0-preview.3
<PackageReference Include="BioFSharp.BioContainers" Version="2.0.0-preview.3" />
paket add BioFSharp.BioContainers --version 2.0.0-preview.3
#r "nuget: BioFSharp.BioContainers, 2.0.0-preview.3"
// Install BioFSharp.BioContainers as a Cake Addin #addin nuget:?package=BioFSharp.BioContainers&version=2.0.0-preview.3&prerelease // Install BioFSharp.BioContainers as a Cake Tool #tool nuget:?package=BioFSharp.BioContainers&version=2.0.0-preview.3&prerelease
Open source bioinformatics and computational biology toolbox written in F#.
Product | Versions Compatible and additional computed target framework versions. |
---|---|
.NET | net5.0 was computed. net5.0-windows was computed. net6.0 was computed. net6.0-android was computed. net6.0-ios was computed. net6.0-maccatalyst was computed. net6.0-macos was computed. net6.0-tvos was computed. net6.0-windows was computed. net7.0 was computed. net7.0-android was computed. net7.0-ios was computed. net7.0-maccatalyst was computed. net7.0-macos was computed. net7.0-tvos was computed. net7.0-windows was computed. net8.0 was computed. net8.0-android was computed. net8.0-browser was computed. net8.0-ios was computed. net8.0-maccatalyst was computed. net8.0-macos was computed. net8.0-tvos was computed. net8.0-windows was computed. |
.NET Core | netcoreapp2.0 was computed. netcoreapp2.1 was computed. netcoreapp2.2 was computed. netcoreapp3.0 was computed. netcoreapp3.1 was computed. |
.NET Standard | netstandard2.0 is compatible. netstandard2.1 was computed. |
.NET Framework | net461 was computed. net462 was computed. net463 was computed. net47 was computed. net471 was computed. net472 was computed. net48 was computed. net481 was computed. |
MonoAndroid | monoandroid was computed. |
MonoMac | monomac was computed. |
MonoTouch | monotouch was computed. |
Tizen | tizen40 was computed. tizen60 was computed. |
Xamarin.iOS | xamarinios was computed. |
Xamarin.Mac | xamarinmac was computed. |
Xamarin.TVOS | xamarintvos was computed. |
Xamarin.WatchOS | xamarinwatchos was computed. |
-
.NETStandard 2.0
- BioFSharp (>= 2.0.0-preview.3)
- BioFSharp.IO (>= 2.0.0-preview.3)
- Docker.DotNet (>= 3.125.2)
- FSharp.Core (>= 6.0.2)
- FSharpAux (>= 1.1.0)
- FSharpAux.IO (>= 1.1.0)
- SharpZipLib (>= 1.3.1)
NuGet packages
This package is not used by any NuGet packages.
GitHub repositories
This package is not used by any popular GitHub repositories.
Version | Downloads | Last updated |
---|---|---|
2.0.0-preview.3 | 154 | 5/11/2022 |
2.0.0-preview.2 | 111 | 2/13/2022 |
2.0.0-preview.1 | 118 | 1/26/2022 |
2.0.0-beta6 | 182 | 5/10/2021 |
2.0.0-beta5 | 205 | 2/16/2021 |
2.0.0-beta4 | 344 | 6/24/2020 |
2.0.0-beta3 | 314 | 6/22/2020 |
2.0.0-beta2 | 335 | 6/22/2020 |
2.0.0-beta1 | 316 | 5/6/2020 |
2.0.0-beta | 309 | 4/28/2020 |
1.2.1-beta2 | 354 | 4/28/2020 |
1.2.1-beta1 | 303 | 4/28/2020 |
1.2.0 | 538 | 3/30/2020 |
1.1.0 | 500 | 3/23/2020 |
1.0.3 | 539 | 2/26/2020 |
1.0.2 | 441 | 2/19/2020 |
All packages now target netstandard2.0 as lowest common denominator.
Additions:**
BioFSharp**:
[Breaking] [Conversion extensions for BioCollections]()
[Breaking] [Tagged Sequence and Phylogenetic Tree have been reworked as top level types](https://github.com/CSBiology/BioFSharp/commit/aec8232dd7725cdbb99a038ebe0c99f26922f31a)
[Add functionality to construct phylogenetic trees from clustered data or raw sequence data](https://github.com/CSBiology/BioFSharp/commit/aec8232dd7725cdbb99a038ebe0c99f26922f31a)
BioFSharp.BioContainers**
BLAST biocontainer :
full blastn, blastn-short, megablast, and dc-megablast DSLs
[Breaking] full blastp, blastp-fast, and blastp-short DSLs
TargetP BioContainer :
Add functions to run the container with a mounted directory
Add TargetP2 BioContainer API
BioFSharp.IO**:
OBO parser: Extended term parser for spec 1.4
OBO parser: fix (#111)[https://github.com/CSBiology/BioFSharp/issues/111]
SOFT parser now parses Data tables
OBO Parser: add verbosity settings ([#129](https://github.com/CSBiology/BioFSharp/pull/129))
[ADD DSSP and Stride parsers](https://github.com/CSBiology/BioFSharp/commit/a1bc02c81d0bfba414313155cec93ef4b6951baa)
[ADD PDB Parser (only some records supported)](https://github.com/CSBiology/BioFSharp/commit/426dee64f0d24b4c9976aac9400df3635d8aef1b))
Bugfixes:**
BioFSharp**:
Fix stack overflow on Phylogenetic tree construction based on hierarchical clusters
BioFSharp.IO**:
OBO parser now correctly parses lists of relationships
[Breaking] FastA.writeToStream is now correctly typed and does not close the stream after writing
SOFT parser now parses sample_label / sample_label_protocol correctly
[Fix fasta writer using UTF8BOM encoding](https://github.com/CSBiology/BioFSharp/commit/beb4158e8e8d71e7c956347db1df2f2e99f8a5e4) ((#116)[https://github.com/CSBiology/BioFSharp/issues/116])
Fix newick writer missing leaf case