.NET Bio is an open source bioinformatics/genomics library for .NET Standard 2.0 that is designed to enable simple loading, saving and analysis of biological data. It includes several common parsers as well as a variety of algorithms for pairwise/multiple alignment and assembly operations.
The common database reader includes:
NCBI genbank reader
NCBI gff/PTT feature sites document reader
KEGG DBGET/LinkDB/BriteText/SSDB rest API
MetaCyc database parser
Common Fasta sequence database I/O
DOOR database reader
etc.
This library provides the NCBI blast+ output parser and some data analysis API, like SBH, BBH, venn diagram analysis.
This package also provides a batch schedule extension for the large scale localblast alignment parallel task in multiple localblast process.
project source code can be download from...
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ISA compliant experimental metadata toolkit in F#. This project is meant as an easy means to open, manipulate and save ISA (Investigation,Study,Assay) metadata files in the dotnet environment.
Excel File IO methods for ISA compliant experimental metadata toolkit in F#. The underlying datamodel can be directly read from and written to ISA-Json and ISA-Excel (ISATab format) files.
Fable compliant release for the ISA compliant experimental metadata toolkit in F#. Additionally to the compiled library, it is shipped with the uncompiled code.