BioFSharp.IO
2.0.0-preview.3
dotnet add package BioFSharp.IO --version 2.0.0-preview.3
NuGet\Install-Package BioFSharp.IO -Version 2.0.0-preview.3
<PackageReference Include="BioFSharp.IO" Version="2.0.0-preview.3" />
paket add BioFSharp.IO --version 2.0.0-preview.3
#r "nuget: BioFSharp.IO, 2.0.0-preview.3"
// Install BioFSharp.IO as a Cake Addin
#addin nuget:?package=BioFSharp.IO&version=2.0.0-preview.3&prerelease
// Install BioFSharp.IO as a Cake Tool
#tool nuget:?package=BioFSharp.IO&version=2.0.0-preview.3&prerelease
Read/write functions for various biological file formats
Product | Versions |
---|---|
.NET | net5.0 net5.0-windows net6.0 net6.0-android net6.0-ios net6.0-maccatalyst net6.0-macos net6.0-tvos net6.0-windows net7.0 net7.0-android net7.0-ios net7.0-maccatalyst net7.0-macos net7.0-tvos net7.0-windows |
.NET Core | netcoreapp2.0 netcoreapp2.1 netcoreapp2.2 netcoreapp3.0 netcoreapp3.1 |
.NET Standard | netstandard2.0 netstandard2.1 |
.NET Framework | net461 net462 net463 net47 net471 net472 net48 net481 |
MonoAndroid | monoandroid |
MonoMac | monomac |
MonoTouch | monotouch |
Tizen | tizen40 tizen60 |
Xamarin.iOS | xamarinios |
Xamarin.Mac | xamarinmac |
Xamarin.TVOS | xamarintvos |
Xamarin.WatchOS | xamarinwatchos |
-
.NETStandard 2.0
- BioFSharp (>= 2.0.0-preview.3)
- FSharp.Core (>= 6.0.2)
- FSharpAux (>= 1.1.0)
- FSharpAux.IO (>= 1.1.0)
NuGet packages (6)
Showing the top 5 NuGet packages that depend on BioFSharp.IO:
Package | Downloads |
---|---|
BioFSharp.ML
Machine learning with BioFSharp and CNTK.Net. |
|
BioFSharp.BioContainers
Open source bioinformatics and computational biology toolbox written in F#. |
|
BIO-BTE-06-L-7_Aux
Auxiliary functions for the course BIO-BTE-06-L-7 |
|
ProteomIQon
ProteomIQon - computational proteomics |
|
BioFSharp.Mz
BioFSharp.Mz - modular computational proteomics |
GitHub repositories
This package is not used by any popular GitHub repositories.
Version | Downloads | Last updated |
---|---|---|
2.0.0-preview.3 | 175 | 5/11/2022 |
2.0.0-preview.2 | 91 | 2/13/2022 |
2.0.0-preview.1 | 98 | 1/26/2022 |
2.0.0-beta6 | 281 | 5/10/2021 |
2.0.0-beta5 | 539 | 2/16/2021 |
2.0.0-beta4 | 1,379 | 6/24/2020 |
2.0.0-beta3 | 387 | 6/22/2020 |
2.0.0-beta2 | 447 | 6/22/2020 |
2.0.0-beta1 | 404 | 5/6/2020 |
2.0.0-beta | 412 | 4/28/2020 |
1.2.1-beta2 | 397 | 4/28/2020 |
1.2.1-beta1 | 396 | 4/28/2020 |
1.2.0 | 1,486 | 3/30/2020 |
1.1.0 | 695 | 3/23/2020 |
1.0.3 | 709 | 2/26/2020 |
1.0.2 | 727 | 2/19/2020 |
All packages now target netstandard2.0 as lowest common denominator.
Additions:**
BioFSharp**:
[Breaking] [Conversion extensions for BioCollections]()
[Breaking] [Tagged Sequence and Phylogenetic Tree have been reworked as top level types](https://github.com/CSBiology/BioFSharp/commit/aec8232dd7725cdbb99a038ebe0c99f26922f31a)
[Add functionality to construct phylogenetic trees from clustered data or raw sequence data](https://github.com/CSBiology/BioFSharp/commit/aec8232dd7725cdbb99a038ebe0c99f26922f31a)
BioFSharp.BioContainers**
BLAST biocontainer :
full blastn, blastn-short, megablast, and dc-megablast DSLs
[Breaking] full blastp, blastp-fast, and blastp-short DSLs
TargetP BioContainer :
Add functions to run the container with a mounted directory
Add TargetP2 BioContainer API
BioFSharp.IO**:
OBO parser: Extended term parser for spec 1.4
OBO parser: fix (#111)[https://github.com/CSBiology/BioFSharp/issues/111]
SOFT parser now parses Data tables
OBO Parser: add verbosity settings ([#129](https://github.com/CSBiology/BioFSharp/pull/129))
[ADD DSSP and Stride parsers](https://github.com/CSBiology/BioFSharp/commit/a1bc02c81d0bfba414313155cec93ef4b6951baa)
[ADD PDB Parser (only some records supported)](https://github.com/CSBiology/BioFSharp/commit/426dee64f0d24b4c9976aac9400df3635d8aef1b))
Bugfixes:**
BioFSharp**:
Fix stack overflow on Phylogenetic tree construction based on hierarchical clusters
BioFSharp.IO**:
OBO parser now correctly parses lists of relationships
[Breaking] FastA.writeToStream is now correctly typed and does not close the stream after writing
SOFT parser now parses sample_label / sample_label_protocol correctly
[Fix fasta writer using UTF8BOM encoding](https://github.com/CSBiology/BioFSharp/commit/beb4158e8e8d71e7c956347db1df2f2e99f8a5e4) ((#116)[https://github.com/CSBiology/BioFSharp/issues/116])
Fix newick writer missing leaf case